We have hosted the application vigor3 in order to run this application in our online workstations with Wine or directly.
Quick description about vigor3:
VIGOR is a tool for annotating coding genes in viral genomes. It was developed by Jeffrey Hoover and Shiliang Wang for The JCVI Genomic Sequencing Center for Infectious Diseases (GSCID).http: //www.biomedcentral.com/content/pdf/1471-2105-11-451.pdf
contact:
Jeff Hoover
301-540-7858
[email protected].
Features:
- understands RNA editing, ribosomal slippage, stop codon read-thru & alternate start codons
- annotates mature peptides on polyproteins
- handles spliced, overlapping, and embedded genes
- handles circular, partial, and draft (gapped) genomes
- diagnoses frameshifts in assembly
- includes reference datasets for more than 50 species
- includes tools for creating new reference datasets
Audience: Science/Research.
User interface: Command-line.
Programming Language: Perl.
Database Environment: SQLite.
Categories:
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