vigor3

We have hosted the application vigor3 in order to run this application in our online workstations with Wine or directly.

Quick description about vigor3:

VIGOR is a tool for annotating coding genes in viral genomes. It was developed by Jeffrey Hoover and Shiliang Wang for The JCVI Genomic Sequencing Center for Infectious Diseases (GSCID).

http: //www.biomedcentral.com/content/pdf/1471-2105-11-451.pdf

contact:
Jeff Hoover
301-540-7858
[email protected].

Features:

• understands RNA editing, ribosomal slippage, stop codon read-thru & alternate start codons
• annotates mature peptides on polyproteins
• handles spliced, overlapping, and embedded genes
• handles circular, partial, and draft (gapped) genomes
• diagnoses frameshifts in assembly
• includes reference datasets for more than 50 species
• includes tools for creating new reference datasets

Audience: Science/Research.
User interface: Command-line.
Programming Language: Perl.
Database Environment: SQLite.

Categories: