We have hosted the application vigor3 in order to run this application in our online workstations with Wine or directly.


Quick description about vigor3:

VIGOR is a tool for annotating coding genes in viral genomes. It was developed by Jeffrey Hoover and Shiliang Wang for The JCVI Genomic Sequencing Center for Infectious Diseases (GSCID).

http: //www.biomedcentral.com/content/pdf/1471-2105-11-451.pdf

contact:
Jeff Hoover
301-540-7858
[email protected].

Features:
  • understands RNA editing, ribosomal slippage, stop codon read-thru & alternate start codons
  • annotates mature peptides on polyproteins
  • handles spliced, overlapping, and embedded genes
  • handles circular, partial, and draft (gapped) genomes
  • diagnoses frameshifts in assembly
  • includes reference datasets for more than 50 species
  • includes tools for creating new reference datasets


Audience: Science/Research.
User interface: Command-line.
Programming Language: Perl.
Database Environment: SQLite.

Categories:
Bio-Informatics

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