subread to run in linux online online with Winfy

We have hosted the application subread to run in linux online in order to run this application in our online workstations with Wine or directly.

Quick description about subread to run in linux online:

The Subread software package is a tool kit for processing next-gen sequencing data. It includes Subread aligner, Subjunc exon-exon junction detector and featureCounts read summarization program.

Subread aligner can be used to align both gDNA-seq and RNA-seq reads. Subjunc aligner was specified designed for the detection of exon-exon junction. For the mapping of RNA-seq reads, Subread performs local alignments and Subjunc performs global alignments. Subread and Subjunc were published in the following paper: Yang Liao, Gordon K Smyth and Wei Shi. "The Subread aligner: fast, accurate and scalable read mapping by seed-and-vote", Nucleic Acids Research, 2013, 41(10): e108

Features:

• read aligner
• next-generation sequencing

Audience: Science/Research.
User interface: Command-line.
Programming Language: C.

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