subread online with Winfy

We have hosted the application subread in order to run this application in our online workstations with Wine or directly.

Quick description about subread:

The Subread software package is a tool kit for processing next-gen sequencing data. It includes Subread aligner, Subjunc exon-exon junction detector and featureCounts read summarization program.

Subread aligner can be used to align both gDNA-seq and RNA-seq reads. Subjunc aligner was specified designed for the detection of exon-exon junction. For the mapping of RNA-seq reads, Subread performs local alignments and Subjunc performs global alignments. Subread and Subjunc were published in the following paper: Yang Liao, Gordon K Smyth and Wei Shi. "The Subread aligner: fast, accurate and scalable read mapping by seed-and-vote", Nucleic Acids Research, 2013, 41(10): e108.

Features:

• read aligner
• next-generation sequencing

Audience: Science/Research.
User interface: Command-line.
Programming Language: C.
Categories: