splitmem to run in linux online online with Winfy

We have hosted the application splitmem to run in linux online in order to run this application in our online workstations with Wine or directly.

Quick description about splitmem to run in linux online:

With the rise of improved sequencing technologies, genomics is expanding from a single reference per species paradigm into a more comprehensive pan-genome approach with multiple individuals represented and analyzed together. Here we introduce a novel O(n log n) time and space algorithm called splitMEM, that directly constructs the compressed de Bruijn graph for a pan-genome of total length n. To achieve this time complexity, we augment the suffix tree with suffix skips, a new construct that allows us to traverse several suffix links in constant time, and use them to efficiently decompose maximal exact matches (MEMs) during a suffix tree traversal.

Audience: Science/Research.
User interface: Command-line.
Programming Language: C++.

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