splicing prediction pipeline online with Winfy

We have hosted the application splicing prediction pipeline in order to run this application in our online workstations with Wine or directly.


Quick description about splicing prediction pipeline:

SPiP is a tool to predict the splice alteration of variant by integrate several prediction tool in a global pipeline.

/!\ for the windows version, all SPiP scores calculate between the version 2.0 and 2.1 before correction are WRONG, please used the version 2.1 corrected or later version. For Linux version, the SPiP scores are correct.

You can also download SPiP in zip format: https: //sourceforge.net/projects/splicing-prediction-pipeline/files/SPiP_alone_v2_0.zip

For Linux (GitHub): https: //github.com/raphaelleman/SPiP

If you have questions, please contact me to: [email protected] or [email protected]

v2.1 corrected (07/2021) :
correction of score calculation
v2.1 (06/2021):
Most strigent on "Alter by complex event"
v2.0 (04/2021):
New SPiP with random forest modelization

old change detailled in https: //sourceforge.net/projects/splicing-prediction-pipeline/files/changeLogBeforev2.0.txt.


User interface: Tk.
Programming Language: S/R.

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