skewer

We have hosted the application skewer in order to run this application in our online workstations with Wine or directly.

Quick description about skewer:

This program implements a novel dynamic programming algorithm dedicated to the task of adapter trimming and it is specially designed for processing illumina paired-end sequences.

Features:

• Detection and removal of adapter sequences
• Insertion and deletion allowed in pattern matching
• Targeted at Single End, Paired End (PE), and Long Mate Pair (LMP) reads
• Demultiplexing of barcoded sequencing runs
• Multi-threading support
• Trimming based on phred quality scores
• IUPAC characters for barcodes and adapters
• Compressed input and output support

Audience: Science/Research.

Programming Language: C++.
Categories: