rnaseq mats

We have hosted the application rnaseq mats in order to run this application in our online workstations with Wine or directly.

Quick description about rnaseq mats:

MATS is a computational tool to detect differential alternative splicing events from RNA-Seq data. The statistical model of MATS calculates the P-value and false discovery rate that the difference in the isoform ratio of a gene between two conditions exceeds a given user-defined threshold. From the RNA-Seq data, MATS can automatically detect and analyze alternative splicing events corresponding to all major types of alternative splicing patterns. MATS handles replicate RNA-Seq data from both paired and unpaired study design. More information can be found at http: //rnaseq-mats.sourceforge.net.


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