quast to run in linux online online with Winfy

We have hosted the application quast to run in linux online in order to run this application in our online workstations with Wine or directly.

Quick description about quast to run in linux online:

QUAST performs fast and convenient quality evaluation and comparison of genome assemblies.

QUAST computes a number of well-known metrics, including contig accuracy, number of genes discovered, N50, and others, as well as introducing new ones, like NA50 (see details in the paper and in the manual). A comprehensive analysis results in summary tables (in plain text, tab-separated and LaTeX formats) and colorful plots. The tool also produces web-based reports condensing all information in one easy to navigate file.

QUAST has an intuitive command-line interface and a detailed manual to help users run it and understand its output. Furthermore, the Lab started a Beta version of web-QUAST at http: //quast.bioinf.spbau.ru/ which makes quality evaluation even more simple.

QUAST and MetaQUAST (extension for metagenomic assemblies) papers were published in Bioinformatics.

Features:

• web-based reports, tables in plain txt, tab-separated and LaTeX formats
• colorful plots and histograms
• quality evaluation with and without a reference genome
• quality evaluation of metagenomic assemblies
• interactive contig browser

Audience: Science/Research, Developers, End Users/Desktop.
User interface: Web-based, Command-line.
Programming Language: Python, JavaScript.

.