qsdpr online with Winfy

We have hosted the application qsdpr in order to run this application in our online workstations with Wine or directly.

Quick description about qsdpr:

This is a viral quasispecies reconstruction software for quasispecies assembly problem on mRNA viruses, which is based on a correlation clustering approach and uses semidefinite optimization framework. The software accepts a reference genome, a NGS read set aligned to this reference and set of SNP locations in the form of a vcf file and outputs an optimal set of reconstructed species genomes which describes the underlying viral population.

  • Quasispecies
  • mRNA virus
  • Clustering
  • Semidefinite program
  • HIV-1 virus

Audience: Science/Research.

Programming Language: Unix Shell, Python, C.

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