We have hosted the application protein cavity search in order to run this application in our online workstations with Wine or directly.


Quick description about protein cavity search:

Software to identify cavities and crevices in proteins. The goal is to be able to take a protein structure, and to differentiate between five different types of environments for each residue: buried, surface, interfacial, cavity, or crevice.

Features:
  • Calculate volumes of internal cavities
  • Determine environment of ionizable residues
  • Calculate depth of burial for ionizable residues
  • Calculate packing density for ionizable residues


Audience: Science/Research.
User interface: Command-line.
Programming Language: Python.
Categories:
Bio-Informatics, Molecular Science

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