protein cavity search

We have hosted the application protein cavity search in order to run this application in our online workstations with Wine or directly.

Quick description about protein cavity search:

Software to identify cavities and crevices in proteins. The goal is to be able to take a protein structure, and to differentiate between five different types of environments for each residue: buried, surface, interfacial, cavity, or crevice.

Features:

• Calculate volumes of internal cavities
• Determine environment of ionizable residues
• Calculate depth of burial for ionizable residues
• Calculate packing density for ionizable residues

Audience: Science/Research.
User interface: Command-line.
Programming Language: Python.
Categories: