pf hp to run in linux online

We have hosted the application pf hp to run in linux online in order to run this application in our online workstations with Wine or directly.

Quick description about pf hp to run in linux online:

Even in the simplified two dimensional HP-model (hydrophob/polar) the prediction of proteinfolding is NP complete. We implement a brute force algorithm with serial and parallel execution to solve short inputs of HP sequences (0-1 bitstrings).

Selbst im vereinfachten zweidimensionalen HP-Modell (hydrophob/polar) ist die Proteinfaltung bereits NP-vollst�ndig. Hier implementieren wir einen brute-force Algorithmus zur L�sung kurzer Eingabesequenzen (0-1-Bitstrings) f�r die Proteinfaltung.

Spende einen Cappuccino:
Bitcoin: 1HqrdnfQgi9B4LW8UEvLAwh7X5gXPCoQ5B
Litecoin: Lbo2jxD85ymyq5167r7yFVZkEr73F2h44B
Paypal: paypal.me/GerritLeder

Credits
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Principle Investigator
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Gerrit Leder: protein folding algorithm design and testing, and initial implementation in Eiffel.

Eiffel Consultant
---------------------
Finnian Reilly: Eiffel code optimization and parallel processing adaptation.
www.hex11software.com
finnian at eiffel hyphen loop dot com

Features:

• parallel computation with command line flag -pf2_mt
• defaults to 4 threads can be customized with switch -threads .
• custom 0-1-bitstring with command line flag -sequence .
• serial algorithm with command line flag -pf2
• To-Do: Bugfix pf3 and pf3_mt, Implementation w/ directions S, R and L
• To-Do: make lib EL void-safe
• To-Do: unit-tests on CLI and IDE

Audience: Healthcare Industry, Science/Research, Education.
User interface: Console/Terminal.
Programming Language: Eiffel.

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