pf hp

We have hosted the application pf hp in order to run this application in our online workstations with Wine or directly.

Quick description about pf hp:

Even in the simplified two dimensional HP-model (hydrophob/polar) the prediction of proteinfolding is NP complete. We implement a brute force algorithm with serial and parallel execution to solve short inputs of HP sequences (0-1 bitstrings).

Selbst im vereinfachten zweidimensionalen HP-Modell (hydrophob/polar) ist die Proteinfaltung bereits NP-vollst�ndig. Hier implementieren wir einen brute-force Algorithmus zur L�sung kurzer Eingabesequenzen (0-1-Bitstrings) f�r die Proteinfaltung.

Spende einen Cappuccino:
Bitcoin: 1HqrdnfQgi9B4LW8UEvLAwh7X5gXPCoQ5B
Litecoin: Lbo2jxD85ymyq5167r7yFVZkEr73F2h44B
Paypal: paypal.me/GerritLeder

Credits
======
Principle Investigator
--------------------------
Gerrit Leder: protein folding algorithm design and testing, and initial implementation in Eiffel.

Eiffel Consultant
---------------------
Finnian Reilly: Eiffel code optimization and parallel processing adaptation.
www.hex11software.com
finnian at eiffel hyphen loop dot com.

Features:

• parallel computation with command line flag -pf2_mt
• defaults to 4 threads can be customized with switch -threads .
• custom 0-1-bitstring with command line flag -sequence .
• serial algorithm with command line flag -pf2
• To-Do: Bugfix pf3 and pf3_mt, Implementation w/ directions S, R and L
• To-Do: make lib EL void-safe
• To-Do: unit-tests on CLI and IDE

Audience: Healthcare Industry, Science/Research, Education.
User interface: Console/Terminal.
Programming Language: Eiffel.
Categories: