pbsuite to run in linux online online with Winfy

We have hosted the application pbsuite to run in linux online in order to run this application in our online workstations with Wine or directly.

Quick description about pbsuite to run in linux online:

This currently hosts two projects created and maintained by Adam English.

PBJelly - the genome upgrading tool.
PBHoney - the structural variation discovery tool

Both are contained within the PBSuite code found in downloads.

----- PBJelly -----
Read The Paper
http: //www.plosone.org/article/info%3Adoi%2F10.1371%2Fjournal.pone.0047768

PBJelly is a highly automated pipeline that aligns long sequencing reads (such as PacBio RS reads or long 454 reads in fasta format) to high-confidence draft assembles. PBJelly fills or reduces as many captured gaps as possible to produce upgraded draft genomes.

----- PBHoney -----
Read The Paper
http: //www.biomedcentral.com/1471-2105/15/180/abstract

PBHoney is an implementation of two variant-identification approaches designed to exploit the high mappability of long reads (i.e., greater than 10,000 bp). PBHoney considers both intra-read discordance and soft-clipped tails of long reads to identify structural variants.

Features:

• Genome Assembly
• Genome Upgrade
• Structural Variation
• Assembly Evaluation

Audience: Science/Research.

Programming Language: Python.

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