pb sqf bacterialtyping

We have hosted the application pb sqf bacterialtyping in order to run this application in our online workstations with Wine or directly.

Quick description about pb sqf bacterialtyping:

Probability Binning - signature Quadratic Form, PB-sQF, types unknown sequence to one of the 628 bacterial library genomes which gives the smallest test statistics thus most similar library strain.
The input file is the k-mer counts of the unknown assembled genome sequence or raw short reads file in decimal format generated by KAnalyze developed by P. Audano et al. (https: //sourceforge.net/projects/kanalyze/).
The download included the library index, the library name and sample unknowns.

Features:

• Calculating test statistics between library and unknown k-mer frequency
• Bacterial sequence typing
• Windows
• Mac

Programming Language: MATLAB.
Categories: