pathoscope online with Winfy

We have hosted the application pathoscope in order to run this application in our online workstations with Wine or directly.

Quick description about pathoscope:

This page is here for archival purpose. Please visit github for the latest version of the software: https: //github.com/pathoscope


PathoScope takes next-generation sequencing reads from a mixture sample and predicts which genomes are present. We use a Bayesian framework combined with an initial reference-based alignment to assign reads to the correct genome of origin.

Pathoscope 2.0:
Wiki:
http: //sourceforge.net/p/pathoscope/wiki/Home/
Tutorial:
http: //sourceforge.net/projects/pathoscope/files/pathoscope2.0_v0.02_tutorial.pdf

Clinical Pathoscope version: http: //sourceforge.net/p/pathoscope/wiki/clinical_pathoscope/

PathoQC download: http: //sourceforge.net/projects/pathoscope/files/pathoqc_v0.1.4.tar.gz/download

Publications: http: //www.microbiomejournal.com/content/2/1/33
http: //www.biomedcentral.com/1471-2105/15/262
http: //genome.cshlp.org/content/23/10/1721

Support:

PS: Please send an email to mani2012 at bu dot edu if you have any questions.

Features:

• PathoQC: PathoQC is a quality control and preprocessing standalone program for a high-throughput dataset. Please download PathoQC from http: //sourceforge.net/projects/pathoscope/files/pathoqc_v0.1.4.tar.gz/download
• PathoQC Publication: http: //la-press.com/article.php?article_id=4828
• Support: https: //groups.google.com/d/forum/pathoscope
• Lab Page: http: //jlab.bu.edu/software/

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