muffinec

We have hosted the application muffinec in order to run this application in our online workstations with Wine or directly.

Quick description about muffinec:

MuffinEC is an error correction software capable of handling all types of errors (insertion deletions, mismatches and unknown bases). It officially supports four technologies (Illumina, 454, ion Torrent and PacBio - experimental) and it also has a generic setup for others (old and/or new). It is released under LGPL version 3.0. MuffinEC can use multicore systems, thanks to its OpenMP implementation.

We are developing the 2nd version of MuffinEC. The beta version is already available online. The changes are listed in the VERSION_HISTORY file. Please report any problem you may encounter at the email address specified in the README file. We really appreciate your help.

Features:

• Handles insertions, deletions, mismatches, unknown bases
• Supports Illumina, 454, Ion Torrent and PacBio (experimental)
• Generic param for other technologies
• MultiThreaded
• Low memory consumption

Audience: Information Technology, Healthcare Industry, Science/Research, Advanced End Users, Developers, End Users/Desktop.
User interface: Command-line.
Programming Language: C++.
Categories: