mspji seq pipeline1 0

We have hosted the application mspji seq pipeline1 0 in order to run this application in our online workstations with Wine or directly.

Quick description about mspji seq pipeline1 0:

MspJI-seq_pipeline1.0 is pipeline for MspJI-digesting sequencing in DNA methylation study. Modification-dependent restriction endonuclease MspJI digestion coupled with next generation sequencing could estimate the methylation state of "CNNR" Cytosine location in the genome by mapping high throughput reads to the reference sequences. MspJI-seq_pipeline1.0 is designed to be a general-purpose mapping program to handle these special characteristics of MspJI-seq. Its alignment is based on the open source program SOAP (Short Oligo Alignment Program), and mCNNR sites recognition is performed by regular expression in perl.

Audience: Science/Research.

Programming Language: Perl.
Database Environment: Flat-file.

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