msp htprimer

We have hosted the application msp htprimer in order to run this application in our online workstations with Wine or directly.

Quick description about msp htprimer:

MSP-HTPrimer is an open source, web-based high-throughput and genome-wide primer design pipeline for bisulfite-based assays (MSP, BSP and COBRA) and MSRE-PCR assay and capable of simultaneously processing hundreds to thousands of target sequences. MSP-HTPrimer takes genome-wide annotations of SNPs and repeats into consideration to design primer pairs for higher success rate. MSP-HTPrimer enables hierarchical filtering and visualisation of designed primers in UCSC genome browser for efficient selection of assays.

Features:

• BSP
• MSP
• DNA methylation
• BSP-COBRA
• MSRE

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