misc genomics tools

We have hosted the application misc genomics tools in order to run this application in our online workstations with Wine or directly.

Quick description about misc genomics tools:

This is a collection of various programs developed in the course of a genomics project, involving the Pseudomonas strain NCIMB10586
These include
* identifying and correcting errors in an (eg) pacbio genome sequence using illumina reads
* prokaryotic sequence/genome annotation
* RNAseq analysis - normalisation and collation of multiple samples as a group
* RNAseq visualisation

All scripts are provided on a 'best efforts' basis, however due to various system changes I do not guarantee that all files are the version used in the analysis.
Also, please be aware that these were very much developed with expediency in mind - that is, the process was expected to be performed in its final form once; little care was given to optimising runtime or chaining scripts together, and sometimes external resources are accessed manually.

Features:

• Genome sequence error correction
• Prokaryotic sequence annotation
• RNAseq normalisation of multiple samples as a group
• RNAseq sample series/time-course visualisation

Audience: Science/Research.

Programming Language: Perl.
Categories: