mira online with Winfy

We have hosted the application mira in order to run this application in our online workstations with Wine or directly.

Quick description about mira:

MIRA - Sequence assembler and sequence mapping for whole genome shotgun and EST / RNASeq sequencing data. Can use Sanger, 454, Illumina and IonTorrent data. PacBio: CCS and error corrected data usable, uncorrected not yet.

Features:

• Allows hybrid assemblies of Sanger, 454, Solexa, IonTorrent and PacBio (CCS & ecCLR) data
• Can use paired-end and / or unpaired data
• Supports ancillary data in TRACEINFO format (from NCBI)
• Marks places of interest with tags so that these can be found quickly in finishing programs
• Has a SNP analysis pipeline for sequencing data of viruses and procaryonts

Audience: Advanced End Users, Science/Research.
User interface: Command-line.
Programming Language: C++.
Categories: