miniabs online with Winfy

We have hosted the application miniabs in order to run this application in our online workstations with Wine or directly.

Quick description about miniabs:

miniABS (mini Absolute Breast Cancer Subtyper) is an absolute, single-sample subtype classifier for breast cancer using Random Forest model of pairwise gene expression ratios (PGER) among 11 functional genes. With a systematic gene selection and reduction step, we aimed to minimize the size of gene set without losing a functional interpretability of the classifier. We validated the model performance using a large, heterogeneous cohort that consists of multiple public datasets across four different platforms. We anticipate that the high accuracy and reproducibility of miniABS may provide a SSP at a low cost, as well as providing a platform for cross comparison among gene expression datasets generated with different technical platforms.

  • an absolute, single-sample subtype classifier of breast cancer with 11 functional genes


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