We have hosted the application methylextract in order to run this application in our online workstations with Wine or directly.


Quick description about methylextract:

MethylExtract is a user friendly tool to generate i) high quality, whole genome methylation maps and ii) to detect sequence variation within the same sample preparation. The program is implemented into a single script and takes into account all major error sources: sequencing errors, bisulfite failure, clonal reads and single nucleotide variants. MethylExtract detects variation (SNVs � Single Nucleotide Variation) in a similar way than VarScan, a very sensitive method extensively used in SNP and genotype calling based on non-bisulfite treated reads.

Features:
  • Methylation and SNV calling from NGS BS-Seq experiments
  • Detects and removes potential PCR duplicates
  • Putative bisulfite failures detection
  • Sequencing errors control
  • Statistical bisulfite failure assessment
  • Bisulfite SAM / BAM files processing
  • Multithreading and memory control


Programming Language: Perl.
Categories:
Bio-Informatics

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