meraculous 2d

We have hosted the application meraculous 2d in order to run this application in our online workstations with Wine or directly.

Quick description about meraculous 2d:

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IMPORTANT: Meraculous-2D has been superseded by the HipMer assembler, available here: https: //sourceforge.net/projects/hipmer/
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Meraculous-2D is a whole genome assembler for NGS reads (Illumina) that is capable of assembling large, diploid genomes with modest computational requirements. Features include:

- Efficient k-mer counting and deBruijn graph traversal
- Two modes of handling of diploid allelic variation
- Improved scaffolding that produces more complete assemblies without compromising scaffolding accuracy.

The assembly is driven by a perl pipeline which performs data fragmentation and load balancing, as well as submission and monitoring of multiple task arrays on a GE/SLURM-type cluster or a standalone multi-core server.

Manuscripts in submission:
https: //arxiv.org/abs/1703.09852
https: //arxiv.org/abs/1608.

Features:

• Eukaryotic Genome Assembly
• Specialized modes for high- and low-heterozygosity genomesembly
• Built-in distributed execution
• Efficient k-mer space operations
• Single-server and cluster-ready deployment (AWS-ready)

Audience: Science/Research.
User interface: Command-line.
Programming Language: Perl, C++.
Categories: