mendelchecker to run in linux online online with Winfy

We have hosted the application mendelchecker to run in linux online in order to run this application in our online workstations with Wine or directly.

Quick description about mendelchecker to run in linux online:

MendelChecker is a likelihood-based measure of Mendelian segregation of Single Nucleotide Polymorphisms (SNPs) in nuclear pedigrees. We developed this method as a quality control measure for novel variant discovery from noisy next-generation sequencing data in pedigrees, such as Restriction site-associated DNA Sequencing (RAD-seq) in non-model organisms. This method implements comparison of heterogametic vs. homogametic transmission, i.e., sex linked vs. autosomal segregation.

Features:

• Measure likelihood of Mendelian transmission in pedigrees
• Autosome vs. sex chromosome assignment
• Reads standard GATK output

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