We have hosted the application mdcons molecular dynamics consensus in order to run this application in our online workstations with Wine or directly.


Quick description about mdcons molecular dynamics consensus:

MDcons is a tool to analyze conserved contacts during Molecular Dynamics (MD) simulations of Protein, Rna, Dna & Ligand based complexes. The input is either a Molecular Dynamics trajectory or a set of snapshots. The input can also be a single snapshot. The outputs are (1) map of most/less frequently conserved contacts during MD (2) a list of most/less frequently conserved contacts during MD.

Features:
  • MDcons runs on 2000+ MD snapshots in less than 2 minutes
  • MDcons handles both Protein, RNA and DNA complexes
  • MDcons handles trajectories/snapshots with or without chain identifyer
  • MDcons is compatible with GROMACS


Audience: Science/Research.
User interface: Console/Terminal, Command-line.
Programming Language: Fortran, Python.
Categories:
Molecular Science, Bio-Informatics, Molecular Mechanics

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