maragap online with Winfy

We have hosted the application maragap in order to run this application in our online workstations with Wine or directly.

Quick description about maragap:

This paper presents `MARAGAP', a reference assisted genome assembly pipeline. MARAGAP uses the principle of Minimum Description Length to determine the optimal reference sequence for the assembly. The optimal reference sequence is used as a template to infer inversions, insertions, deletions and SNPs in the target genome. MARAGAP uses an algorithmic approach to detect and correct inversions and deletions, a De-Bruijn graph based approach to infer the insertions, an affine-match affine-gap local alignment tool to estimate the locations of those insertions and a Bayesian estimation framework for SNPs.



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