lr2rmats

We have hosted the application lr2rmats in order to run this application in our online workstations with Wine or directly.

Quick description about lr2rmats:

lr2rmats is a Snakemake-based light-weight pipeline which is designed to utilize both third-generation long-read and second-generation short-read RNA-seq data to generate an enhanced gene annotation file. The newly generated annotation file could be provided to rMATS for differential alternative splicing analysis.
More information can be found at https: //sourceforge.net/p/lr2rmats/wiki/Home/.

Features:

• Long read
• RNA-seq
• Alternative splicing
• Pacific Biosciences
• Oxford Nanopore Technologies

Audience: Science/Research.
User interface: Command-line.
Programming Language: Unix Shell, Python, C.
Categories: