kinannote to run in linux online

We have hosted the application kinannote to run in linux online in order to run this application in our online workstations with Wine or directly.

Quick description about kinannote to run in linux online:

Kinannote identifies and classifies protein kinases in a user-provided fasta file using an HMM derived from serine/threonine protein kinases, a position specific scoring matrix derived from the HMM, and comparison with a local version of the curated kinase database from kinase.com. If the user inputs a complete proteome, additional modules evaluate the completeness of the kinome and place it in context with reference kinomes. Kinannote runs on a unix command line and depends on local hmmer 2 and Blast 2.24 installations.

Citing Kinannote:

Kinannote, a computer program to identify and classify members of the eukaryotic protein kinase superfamily
Jonathan M. Goldberg; Allison Griggs; Janet L. Smith; Brian Haas; Jennifer Wortman; Qiandong Zeng
Bioinformatics 2013; doi: 10.1093/bioinformatics/btt419

http: http: //bioinformatics.oxfordjournals.org/content/29/19/2387.full

pdf: http: //bioinformatics.oxfordjournals.org/content/29/19/2387.full.pdf+html

Audience: Science/Research.

Programming Language: Perl.

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