introminer

We have hosted the application introminer in order to run this application in our online workstations with Wine or directly.

Quick description about introminer:

Created by Julie Shay and Claudio Slamovits.
Introminer reads a sequence file with genomic data that contains sequence and intron positions in genbank format. It extracts positional and sequence data as well as the intronic sequences and other important parameters to study gene architecture and intron evolution at a genome-wide scale.

Features:

• Reads Genbank format sequence files containing genomic data (partial or full genome data)
• Extracts various useful information on introns such as number, size, position in the genes and sequence
• Detects introns with noncanonical borders
• Output includes CDS sequences of all the genes (introns removed)

Audience: Science/Research.
User interface: .NET/Mono.
Programming Language: Perl.
Categories: