We have hosted the application imaginganalysis to run in windows online over linux online in order to run this application in our online workstations with Wine or directly.


Quick description about imaginganalysis to run in windows online over linux online:

ImagingAnalysis is a Mathematica package that performs grid-based analysis of time-lapse imaging data saved in a sequence of TIFF files. This package requires Mathematica 7.0.

Revised on 14 May 2017: Bugs are fixed and incompatibility issues are resolved. The current version runs on Mathematica 11.

Features:
  • Extracts time series from individual grids (cells) and plots in various formats
  • Detects peak positions and plot them as raster plots and histograms
  • Displays spatial distribution of oscillatory parameters, e.g. period
  • Estimates period using three independent measures (FFT/peak-peak/unwrapping)
  • Extracts time-dependent phases by using dimensional embedding
  • Detrends and normalizes raw time series
  • Reconstruct time-lapse images using normalized oscillations
  • Find clusters using spectral clustering and partial correlations
  • Calculates time-dependent phase coherence by Kuramoto Synchronization Index
  • Performs phase unwrapping
  • Animates phase development in a clock-like format


Audience: Healthcare Industry, Science/Research, by End-User Class.
User interface: Other toolkit.
Programming Language: Mathematica.

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