imaginganalysis

We have hosted the application imaginganalysis in order to run this application in our online workstations with Wine or directly.

Quick description about imaginganalysis:

ImagingAnalysis is a Mathematica package that performs grid-based analysis of time-lapse imaging data saved in a sequence of TIFF files. This package requires Mathematica 7.0.

Revised on 14 May 2017: Bugs are fixed and incompatibility issues are resolved. The current version runs on Mathematica 11.

Features:

• Extracts time series from individual grids (cells) and plots in various formats
• Detects peak positions and plot them as raster plots and histograms
• Displays spatial distribution of oscillatory parameters, e.g. period
• Estimates period using three independent measures (FFT/peak-peak/unwrapping)
• Extracts time-dependent phases by using dimensional embedding
• Detrends and normalizes raw time series
• Reconstruct time-lapse images using normalized oscillations
• Find clusters using spectral clustering and partial correlations
• Calculates time-dependent phase coherence by Kuramoto Synchronization Index
• Performs phase unwrapping
• Animates phase development in a clock-like format

Audience: Healthcare Industry, Science/Research, by End-User Class.
User interface: Other toolkit.
Programming Language: Mathematica.
Categories: