hamstr online with Winfy

We have hosted the application hamstr in order to run this application in our online workstations with Wine or directly.


Quick description about hamstr:

HaMStR has moved to https: //github.com/bionf/hamstr where it is now part of the HaMStR-OneSeq package.

HaMStR is a profile hidden Markov model based tool for a directed ortholog search in EST or protein sequence data. The program takes a pre-defined core group of orthologous sequences (core orthologs) and a set of sequences from a search taxon as input. HaMStR then combines in a two-step strategy a pHMM based search and a reverse search via BLAST to extend the core ortholog group with novel sequences from the search taxon.

Audience: Science/Research.

Programming Language: Perl.
Categories:
Bio-Informatics

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