genoo hts to run in linux online online with Winfy

We have hosted the application genoo hts to run in linux online in order to run this application in our online workstations with Wine or directly.

Quick description about genoo hts to run in linux online:

GenOO-HTS [jee-noo] is an open-source; object-oriented Perl framework specifically developed for the design of High Throughput Sequencing (HTS) analysis tools. The primary aim of GenOO-HTS is to make simple HTS analyses easy and complicated analyses possible. GenOO-HTS models biological entities into Perl objects and provides relevant attributes and methods that allow for the manipulation of high throughput sequencing data. Using GenOO-HTS as a core development module reduces the overhead and complexity of managing the data and the biological entities at hand. GenOO-HTS has been designed to be flexible, easily extendable with modular structure and minimal requirements for external tools and libraries.

Features:

• Organize biological entities as perl objects (genomic regions, genes, transcripts, introns/exons, etc)
• Organize sequencing entities as perl objects/attributes (sequencing reads, alignments, etc)
• Make I/O from widely used file formats easy (SAM, BED, FASTA, FASTQ)
• Be consistent and easily extendable

Audience: Science/Research, Developers.

Programming Language: Perl.

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