genenetweaver

We have hosted the application genenetweaver in order to run this application in our online workstations with Wine or directly.

Quick description about genenetweaver:

GeneNetWeaver (GNW) is an open-source tool for in silico benchmark generation and performance profiling of network inference methods. GNW was used to generate the community-wide DREAM3, DREAM4 and DREAM5 In Silico Challenges.

Features:

• Extraction of modules from known transcriptional regulatory networks (E.coli, Yeast, etc.)
• Generation of realistic in-silico gene network benchmarks for network inference methods
• Simulation of realistic biological experiments (knowckout, knockdown, dual-knockout, multifactorial perturbations, time series, etc.)
• Performance evaluation of network predictions (Precision-Recall, ROC, motif analysis)

Audience: Science/Research.
User interface: Java Swing.
Programming Language: Java.
Categories: