excavator tool to run in linux online online with Winfy

We have hosted the application excavator tool to run in linux online in order to run this application in our online workstations with Wine or directly.

Quick description about excavator tool to run in linux online:

ATTENTION!!!!!ATTENTION!!!!!ATTENTION!!!!!ATTENTION!!!!!
We recently published on BMC Genomics a novel software package, named XCAVATOR, for the identification of CNVs/CNAs from short and long reads whole-genome sequencing experiments (https: //bmcgenomics.biomedcentral.com/articles/10.1186/s12864-017-4137-0).
XCAVATOR is freely available at http: //sourceforge.net/projects/xcavator/.


EXCAVATOR is a novel software package for the detection of copy number variants (CNVs) from whole-exome sequencing data.
EXCAVATOR has been published on Genome Biology (http: //genomebiology.com/2013/14/10/R120/abstract).


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ATTENTION!!!!! In order to use properly the EXCAVATOR tool, users must download the uniqueome mappability files at the following link:

http: //grimmond.imb.uq.edu.au/uniqueome/downloads/hg19_uniqueome.coverage.base-space.25.1.Wig.gz (for hg19)
http: //grimmond.imb.uq.edu.au/uniqueome/downloads/hg18_uniqueome.coverage.base-space.25.1.Wig.gz

Features:

• Next Generation Sequencing
• Copy Number Variants
• Whole Exome Sequencing

Programming Language: Perl.

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