drug extraction to run in linux online online with Winfy

We have hosted the application drug extraction to run in linux online in order to run this application in our online workstations with Wine or directly.

Quick description about drug extraction to run in linux online:

Drug name recognition and normalisation/grounding to DrugBank ids and standard names.

Package provides 2 taggers:
1. DrugTagger - CRF-based with DrugBank presence feature (see feature set for details).
2. DrugnameGazetteer - gazetteer/dictionary-based. Dictionary created from DrugBank.ca database.
Both taggers include grounding/normalisation to DrugBank ids and standard names.

Feature set:
Word, Word-1, Word+1, Word-1_Word, Word_Word+1, DrugBankPresence, POS
DrugBankPresence feature indicates the presence of the drug name in the DrugBank.

Using CONLL-Evaluation:
processed 32065 tokens with 3656 phrases; found: 3251 phrases; correct: 2786.
accuracy: 95.25%; precision: 85.70%; recall: 76.20%; FB1: 80.67


Using GATE Corpus Benchmark:
Strict: P: 0.65 R: 0.73 F1: 0.69
Lenient: P: 0.74 R: 0.84 F1: 0.78

The details of how to reproduce evaluation, see README.

To use standalone version for tagging download DrugExtractionStandalone.tar.gz from Files.


User interface: Console/Terminal.
Programming Language: Java.

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