digital expression on the web to run in linux online online with Winfy

We have hosted the application digital expression on the web to run in linux online in order to run this application in our online workstations with Wine or directly.

Quick description about digital expression on the web to run in linux online:

DEW is a platform that allows users to explore RNA-Seq data. A web-based Graphical User Interface is included.

The analysis proceeds as such: gapped alignments are performed and corrected for length, PCR and fragment bias so that a Fragment Per (effective) Kilobase per Million of reads (FPKM) is estimated as well as the simpler Reads Per Kb per Million of reads (RPKM). When provided with multiple isoforms and in the �contextual� mode, corrections include a expectation maximization algorithm estimates effective expression profiles and a corrected alignment is produced. For each gene the user provides, DEW computes coverage descriptive statistics (RPKM, FKMP and total, mean and median corrected counts), expression profiles (normalized as R/FPKM and trimmed mean of fold change). DEW allows users to explore the data by providing interactive graphs.

Audience: Science/Research.
User interface: Web-based.
Programming Language: Perl, JavaScript, S/R.
Database Environment: SQLite.
.