cstone online with Winfy

We have hosted the application cstone in order to run this application in our online workstations with Wine or directly.

Quick description about cstone:

CStone is a de novo assembler for RNA-Seq data that uses de Bruijn like graphs and annotates each contig produced with one of three graph classification levels indicating whether or not it can be guaranteed to be non chimeric. Classification levels are dependent on the complexity of the gene family from which the reads are derived. As a by-product, this also provides insight into the structural makeup of the underlying gene families that have been sequenced. Further details will be available shortly within our paper: https: //pubmed.ncbi.nlm.nih.gov/34813594/.

Features:

• De novo assembly of RNA-Seq data.
• Identification of non-chimeric contigs.
• Cross-platform compatibility.
• Executable jar available.
• No external packages required.
• Code easy to follow and incorporated to other tools.
• Information on complexity of underlying gene families.
• de Bruijn like (more lenient) approach.

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