cnvision to run in linux online online with Winfy

We have hosted the application cnvision to run in linux online in order to run this application in our online workstations with Wine or directly.

Quick description about cnvision to run in linux online:

CNVision is a Perl script that runs Illumina genotyping data (all chips from 300k to latest Omni) through PennCNV, QuantiSNPv2.3 and GNOSIS (an in-built algorithm). It merges the results and assesses the quality of the raw data. CNVision can also identify de novo CNVs in family-based data using a highly accurate algorithm that considers the possibility of CNVs in either parent based on the raw genotyping data.

The script is optimized to work in a UNIX-based environment; it should work in Windows, however running the PennCNV component gives errors with the newer versions of PennCNV.

CNVision was written to analyze data for the Simons Simplex Collection (SSC) autism data. A fill description of methods are given in the following paper which can be used to reference CNVision:
http: //www.ncbi.nlm.nih.gov/pubmed/21658581

Audience: Science/Research.
User interface: Console/Terminal.
Programming Language: Perl.

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