celltypist

We have hosted the application celltypist in order to run this application in our online workstations with Wine or directly.

Quick description about celltypist:

CellTypist is an automated tool for cell type classification, harmonization, and integration. Classification, transfer cell type labels from the reference to query dataset. Harmonization, match and harmonize cell types defined by independent datasets. integration, integrate cell and cell types with supervision from harmonization. CellTypist recapitulates cell type structure and biology of independent datasets. Regularised linear models with Stochastic Gradient Descent provide a fast and accurate prediction. Scalable and flexible. Python-based implementation is easy to integrate into existing pipelines. A community-driven encyclopedia for cell types.

Features:

• Use in the Python environment
• Supplemental guidance
• Inspection of the harmonization result
• Cross-dataset cell type harmonization
• Integrate cell and cell types with supervision from harmonization
• Transfer cell type labels from the reference to query dataset

Programming Language: Python.
Categories: