biocompup align

We have hosted the application biocompup align in order to run this application in our online workstations with Wine or directly.

Quick description about biocompup align:

C++ library for protein sequence profile to profile alignment. Implementing numerous known alignment variants in a flexible and manageable architecture.

Features:

• Make sequence to sequence alignment
• Make profile to sequence alignment
• Make profile to profile alignment
• Use three different weighting schemes in the construction of profiles
• Use eleven different scoring functions used in alignments against profile Profile
• Use structural information of various kinds
• Use of penalty functions for linear gap
• Perform global, local and semi-global alignments

Audience: Science/Research.
User interface: Console/Terminal.
Programming Language: C++.
Categories: