barracuda fast short read aligner to run in linux online online with Winfy

We have hosted the application barracuda fast short read aligner to run in linux online in order to run this application in our online workstations with Wine or directly.

Quick description about barracuda fast short read aligner to run in linux online:

Barracuda is a high-speed sequence aligner based on Sanger's BWA and utilizes the latest Nvidia CUDA architecture for accelerating alignments of sequence reads generated by next-generation sequencers.

Features:

• Fixed problems with compiling the software in Ubuntu 16.04
• Tweak: SAMPE 8-core limit is now lifted
• FM-index sequencing read mapper software using NVIDIA CUDA acceleration
• Outputs in SAM format for downstream analyses
• Requires NVIDIA graphics card with compute capability 3.5 or above and at least 1GB VRAM
• Requires NVIDIA CUDA SDK toolkit 6.x or above and NVIDIA driver 340 or above
• BarraCUDA is published on BMC Research Notes 2012, 5: 27, doi: 10.1186/1756-0500-5-27
• Paper URL: http: //www.biomedcentral.com/1756-0500/5/27
• This project is supported by the CUDA centre of excellence at Cambridge University

Audience: Science/Research.
User interface: Command-line.
Programming Language: C++, C.

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