bambam to run in linux online online with Winfy

We have hosted the application bambam to run in linux online in order to run this application in our online workstations with Wine or directly.

Quick description about bambam to run in linux online:

BamBam includes numerous tools for analyzing DNA next-generation sequencing data. Tools are provided for calling SNPs and indels, identifying large scale deletions, tabulating counts of mapped reads, methylation analysis, and more.

Depends on SAMtools (http: //samtools.sourceforge.net/) and BAMtools (https: //github.com/pezmaster31/bamtools). Also uses BioPerl, which is included in the download tarball.

Features:

• call SNPs and indels
• impute genotypes
• build consensus sequences
• tabulate counts of mapped reads (RNA-seq)
• infer haplotype phasing with K-means clustering
• analyze DNA methylation (bisulfite-sequencing)

Audience: Science/Research.

Programming Language: Perl, C++.

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