balign

We have hosted the application balign in order to run this application in our online workstations with Wine or directly.

Quick description about balign:

Multi-functional batch sequence aligner incorporating Needleman-Wunsch, Smith-Waterman and Oommen-Kashyap algorithms along with compound alignment of secondary sequences.

Features:

• Global sequence alignment using Needleman-Wunsch algorithm
• Local sequence alignment using Smith-Waterman algorithm
• Transition probability computation using Oommen-Kashyap algorithm
• Compound alignment of sequence pairs
• Batch processing

Audience: Science/Research.
User interface: Command-line.
Programming Language: Eiffel.
Categories: