athus

We have hosted the application athus in order to run this application in our online workstations with Wine or directly.

Quick description about athus:

This project assists you in performing population genetic analyses by taking over the ugly, boring and error-prone data manipulation steps.
Starting from well specified input formats VCF, BED and FASTA and a unique configuration file describing data (f.e. from SNP-arrays or sequencing) as well as filtering one can create standard POPGEN formats like Eigenstrat, PEDMAP (PLINK), Treemix .
In addition there are several utilities for
* generating VCF from SNPArray data (NCBI - GEO, Illumina call files)
* work with genetic maps .

Audience: Science/Research.
User interface: Console/Terminal, Command-line.
Programming Language: Java.
Categories: