arden

We have hosted the application arden in order to run this application in our online workstations with Wine or directly.

Quick description about arden:

We introduce ARDEN (Artificial Reference Driven Estimation of false positives in NGS data), a novel benchmark that estimates error rates based on real experimental reads and an additionally generated artificial reference genome. It allows the computation of error rates specifically for a dataset and the construction of a ROC-curve. Thereby, it can be used to optimize parameters for read mappers, to select read mappers for a specific problem or also to filter alignments based on quality estimation.


User interface: Command-line.
Programming Language: Python.
Categories: