123ngs online with Winfy

We have hosted the application 123ngs in order to run this application in our online workstations with Wine or directly.

Quick description about 123ngs:

123Fastq, as the first member of 123NGS family, performs all the pre-processes around next-generation sequencing reads (FASTQ files) easier than ever in the field of open source tools.�

Download quick user manual:
http: //bit.ly/36uoA2C

This work has been done under the supervision of
Dr.Javad Zahiri, Bioinformatics and Computational Omics Lab (BioCOOL)
Dr.Masoud Garshasbi, Department of Medical Genetics, Faculty of Medical Sciences, Tarbiat Modares University, Tehran, Iran.

  • Next generation sequencing reads quality check
  • Quality check of paired-end reads
  • Flexible trimmer
  • Trim recommendations based on quality check results
  • Adapter decontamination by two approaches
  • Fast5 to FASTQ conversion
  • SAM/BAM to FASTQ conversion
  • Demultiplexing FASTQ reads
  • Cross platform (unix, windows)
  • Written in java

User interface: Java Swing.
Programming Language: Java.


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