123ngs online with Winfy

We have hosted the application 123ngs in order to run this application in our online workstations with Wine or directly.

Quick description about 123ngs:

123Fastq, as the first member of 123NGS family, performs all the pre-processes around next-generation sequencing reads (FASTQ files) easier than ever in the field of open source tools.�

Download quick user manual:
http: //bit.ly/36uoA2C


This work has been done under the supervision of
Dr.Javad Zahiri, Bioinformatics and Computational Omics Lab (BioCOOL)
and�
Dr.Masoud Garshasbi, Department of Medical Genetics, Faculty of Medical Sciences, Tarbiat Modares University, Tehran, Iran.

Features:

• Next generation sequencing reads quality check
• Quality check of paired-end reads
• Flexible trimmer
• Trim recommendations based on quality check results
• Adapter decontamination by two approaches
• Fast5 to FASTQ conversion
• SAM/BAM to FASTQ conversion
• Demultiplexing FASTQ reads
• Cross platform (unix, windows)
• Written in java

User interface: Java Swing.
Programming Language: Java.

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