trj cavity to run in linux online online with Winfy

We have hosted the application trj cavity to run in linux online in order to run this application in our online workstations with Wine or directly.

Quick description about trj cavity to run in linux online:

trj_cavity finds protein cavities throughout Molecular Dynamics (MD) simulation trajectories. The program works with files in PDB format, but it also can read/generate GROMACS compatible formats such as XTC.

The same project can be compiled as a GROMACS tool or as a standalone version. Installation instructions are provided in the INSTALL file of the project and in https: //sourceforge.net/p/trjcavity/wiki/Home/#ffad

If you need support using this tool (or report bugs), please post it in the discussion forum.

Remarks: v2 runs in parallel and supports GROMACS v5.1+ series. If you want to continue on using GROMACS v4.x, please use trj_cavity_v1.1.

Features:

• Finds protein cavities in MD simulation trajectories.
• Produces MD trajectories of protein cavities vs time.
• Provides statistics of protein cavity distribution.
• Calculates cavity volume descriptor.
• Normal axis pore tunnel radius profile.

Programming Language: C++.

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